Browsing Universitätsbibliographie by Author "Petras, Daniel"

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Browsing Universitätsbibliographie by Author "Petras, Daniel"

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  • Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
    Schmid, Robin; Petras, Daniel; Nothias, Louis-Felix; Wang, Mingxun; Aron, Allegra T.; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Duhrkop, Kai; Korf, Ansgar; Pluskal, Tomas; Kamenik, Zdenek; Jarmusch, Alan K.; Caraballo-Rodriguez, Andres Mauricio; Weldon, Kelly C.; Nothias-Esposito, Melissa; Aksenov, Alexander A.; Bauermeister, Anelize; Orio, Andrea Albarracin; Grundmann, Carlismari O.; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M.; Gentry, Emily C.; Hovelmann, Yannick; Kalinina, Svetlana A.; Pendergraft, Matthew A.; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Russo, Helena Mannochio; Arndt, Birgit; Hubner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A.; Aluwihare, Lihini, I; Bocker, Sebastian; McPhail, Kerry L.; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C. (2021)
  • Listeria monocytogenes exposed to antimicrobial peptides displays differential regulation of lipids and proteins associated to stress response
    Stincone, Paolo; Veras, Flavio Fonseca; Micalizzi, Giuseppe; Donnarumma, Danilo; Celano, Gaetano Vitale; Petras, Daniel; de Angelis, Maria; Mondello, Luigi; Brandelli, Adriano (2022)
  • Mass spectrometry DDA parameters and global coverage of the metabolome: Spectral molecular networks of momordica cardiospermoides plants
    Ramabulana, Anza-Tshilidzi; Petras, Daniel; Madala, Ntakadzeni E.; Tugizimana, Fidele (2023)
  • Metabolomics and Molecular Networking to Characterize the Chemical Space of Four Momordica Plant Species
    Ramabulana, Anza-Tshilidzi; Petras, Daniel; Madala, Ntakadzeni E.; Tugizimana, Fidele (2021)
  • microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
    Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; Gomes, Paulo Wender P.; Caraballo-Rodriguez, Andres M.; El Abiead, Yasin; Aron, Allegra T.; Gentry, Emily C.; Zemlin, Jasmine; Meehan, Michael J.; Avalon, Nicole E.; Cichewicz, Robert H.; Buzun, Ekaterina; Terrazas, Marvic Carrillo; Hsu, Chia-Yun; Oles, Renee; Ayala, Adriana Vasquez; Zhao, Jiaqi; Chu, Hiutung; Kuijpers, Mirte C. M.; Jackrel, Sara L.; Tugizimana, Fidele; Nephali, Lerato Pertunia; Dubery, Ian A.; Madala, Ntakadzeni Edwin; Moreira, Eduarda Antunes; Costa-Lotufo, Leticia Veras; Lopes, Norberto Peporine; Rezende-Teixeira, Paula; Jimenez, Paula C.; Rimal, Bipin; Patterson, Andrew D.; Traxler, Matthew F.; Pessotti, Rita de Cassia; Alvarado-Villalobos, Daniel; Tamayo-Castillo, Giselle; Chaverri, Priscila; Escudero-Leyva, Efrain; Quiros-Guerrero, Luis-Manuel; Bory, Alexandre Jean; Joubert, Juliette; Rutz, Adriano; Wolfender, Jean-Luc; Allard, Pierre-Marie; Sichert, Andreas; Pontrelli, Sammy; Pullman, Benjamin S.; Bandeira, Nuno; Gerwick, William H.; Gindro, Katia; Massana-Codina, Josep; Wagner, Berenike C.; Forchhammer, Karl; Petras, Daniel; Aiosa, Nicole; Garg, Neha; Liebeke, Manuel; Bourceau, Patric; Kang, Kyo Bin; Gadhavi, Henna; de Carvalho, Luiz Pedro Sorio; dos Santos, Mariana Silva; Perez-Lorente, Alicia Isabel; Molina-Santiago, Carlos; Romero, Diego; Franke, Raimo; Bronstrup, Mark; de Leon, Arturo Vera Ponce; Pope, Phillip Byron; La Rosa, Sabina Leanti; La Barbera, Giorgia; Roager, Henrik M.; Laursen, Martin Frederik; Hammerle, Fabian; Siewert, Bianka; Peintner, Ursula; Licona-Cassani, Cuauhtemoc; Rodriguez-Orduna, Lorena; Rampler, Evelyn; Hildebrand, Felina; Koellensperger, Gunda; Schoeny, Harald; Hohenwallner, Katharina; Panzenboeck, Lisa; Gregor, Rachel; O'Neill, Ellis Charles; Roxborough, Eve Tallulah; Odoi, Jane; Bale, Nicole J.; Ding, Su; Damste, Jaap S. Sinninghe; Li Guan, Xue; Cui, Jerry J.; Ju, Kou-San; Silva, Denise Brentan; Ribeiro Silva, Fernanda Motta; da Silva, Gilvan Ferreira; Koolen, Hector H. F.; Grundmann, Carlismari; Clement, Jason A.; Mohimani, Hosein (2024)
  • Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter
    Quinlan, Zachary A.; Nelson, Craig E.; Koester, Irina; Petras, Daniel; Nothias, Louis-Felix; Comstock, Jacqueline; White, Brandie M.; Aluwihare, Lihini I.; Bailey, Barbara A.; Carlson, Craig A.; Dorrestein, Pieter C.; Haas, Andreas F.; Wegley Kelly, Linda (2025)
  • Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses
    Mannochio-Russo, Helena; Swift, Sean O. I.; Nakayama, Kirsten K.; Wall, Christopher B.; Gentry, Emily C.; Panitchpakdi, Morgan; Caraballo-Rodriguez, Andres M.; Aron, Allegra T.; Petras, Daniel; Dorrestein, Kathleen; Dorrestein, Tatiana K.; Williams, Taylor M.; Nalley, Eileen M.; Altman-Kurosaki, Noam T.; Martinelli, Mike; Kuwabara, Jeff Y.; Darcy, John L.; Bolzani, Vanderlan S.; Wegley Kelly, Linda; Mora, Camilo; Yew, Joanne Y.; Amend, Anthony S.; McFall-Ngai, Margaret; Hynson, Nicole A.; Dorrestein, Pieter C.; Nelson, Craig E. (2023)
  • Native mass spectrometry-based metabolomics identifies metal-binding compounds
    Aron, Allegra T.; Petras, Daniel; Schmid, Robin; Gauglitz, Julia M.; Buttel, Isabell; Antelo, Luis; Zhi, Hui; Nuccio, Sean-Paul; Saak, Christina C.; Malarney, Kien P.; Thines, Eckhard; Dutton, Rachel J.; Aluwihare, Lihini, I; Raffatellu, Manuela; Dorrestein, Pieter C. (2022)
  • Native metabolomics identifies the rivulariapeptolide family of protease inhibitors
    Reher, Raphael; Aron, Allegra T.; Fajtova, Pavla; Stincone, Paolo; Wagner, Berenike; Perez-Lorente, Alicia, I; Liu, Chenxi; Ben Shalom, Ido Y.; Bittremieux, Wout; Wang, Mingxun; Jeong, Kyowon; Matos-Hernandez, Marie L.; Alexander, Kelsey L.; Caro-Diaz, Eduardo J.; Naman, C. Benjamin; Scanlan, J. H. William; Hochban, Phil M. M.; Diederich, Wibke E.; Molina-Santiago, Carlos; Romero, Diego; Selim, Khaled A.; Sass, Peter; Broetz-Oesterhelt, Heike; Hughes, Chambers C.; Dorrestein, Pieter C.; O'Donoghue, Anthony J.; Gerwick, William H.; Petras, Daniel (2022)
  • Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
    Bittremieux, Wout; Avalon, Nicole E.; Thomas, Sydney P.; Kakhkhorov, Sarvar A.; Aksenov, Alexander A.; Gomes, Paulo Wender P.; Aceves, Christine M.; Caraballo-Rodriguez, Andres Mauricio; Gauglitz, Julia M.; Gerwick, William H.; Huan, Tao; Jarmusch, Alan K.; Kaddurah-Daouk, Rima F.; Kang, Kyo Bin; Kim, Hyun Woo; Kondic, Todor; Mannochio-Russo, Helena; Meehan, Michael J.; Melnik, Alexey V.; Nothias, Louis-Felix; O'Donovan, Claire; Panitchpakdi, Morgan; Petras, Daniel; Schmid, Robin; Schymanski, Emma L.; van der Hooft, Justin J. J.; Weldon, Kelly C.; Yang, Heejung; Xing, Shipei; Zemlin, Jasmine; Wang, Mingxun; Dorrestein, Pieter C. (2023)
  • Oxidation state of bioavailable dissolved organic matter influences bacterioplankton respiration and growth efficiency
    Stephens, Brandon M.; Stincone, Paolo; Petras, Daniel; English, Chance J.; Opalk, Keri; Giovannoni, Stephen; Carlson, Craig A. (2025)
  • Portosystemic shunt placement reveals blood signatures for the development of hepatic encephalopathy through mass spectrometry
    Dantas Machado, Ana Carolina; Ramos, Stephany Flores; Gauglitz, Julia M.; Fassler, Anne-Marie; Petras, Daniel; Aksenov, Alexander A.; Kim, Un Bi; Lazarowicz, Michael; Barnard Giustini, Abbey; Aryafar, Hamed; Vodkin, Irine; Warren, Curtis; Dorrestein, Pieter C.; Zarrinpar, Ali; Zarrinpar, Amir (2023)
  • Reproducible mass spectrometry data processing and compound annotation in MZmine 3
    Heuckeroth, Steffen; Damiani, Tito; Smirnov, Aleksandr; Mokshyna, Olena; Brungs, Corinna; Korf, Ansgar; Smith, Joshua David; Stincone, Paolo; Dreolin, Nicola; Nothias, Louis-Felix; Hyoetylaeinen, Tuulia; Oresic, Matej; Karst, Uwe; Dorrestein, Pieter C.; Petras, Daniel; Du, Xiuxia; van der Hooft, Justin J. J.; Schmid, Robin; Pluskal, Tomas (2024)
  • Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides
    Hansen, Mathias H.; Adamek, Martina; Iftime, Dumitrita-Crina; Petras, Daniel; Schuseil, Frauke; Grond, Stephanie; Stegmann, Evi; Cryle, Max J.; Ziemert, Nadine (2023)
  • Spatial Venomics?Cobra Venom System Reveals Spatial Differentiation of Snake Toxins by Mass Spectrometry Imaging
    Hempel, Benjamin-Florian; Damm, Maik; Petras, Daniel; Kazandjian, Taline D.; Szentiks, Claudia A.; Fritsch, Guido; Nebrich, Grit; Casewell, Nicholas R.; Klein, Oliver; Sussmuth, Roderich D. (2023)
  • Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
    Shaffer, Justin P.; Nothias, Louis-Felix; Thompson, Luke R.; Sanders, Jon G.; Salido, Rodolfo A.; Couvillion, Sneha P.; Brejnrod, Asker D.; Lejzerowicz, Franck; Haiminen, Niina; Huang, Shi; Lutz, Holly L.; Zhu, Qiyun; Martino, Cameron; Morton, James T.; Karthikeyan, Smruthi; Nothias-Esposito, Melissa; Duehrkop, Kai; Boecker, Sebastian; Kim, Hyun Woo; Aksenov, Alexander A.; Bittremieux, Wout; Minich, Jeremiah J.; Marotz, Clarisse; Bryant, MacKenzie M.; Sanders, Karenina; Schwartz, Tara; Humphrey, Greg; Vasquez-Baeza, Yoshiki; Tripathi, Anupriya; Parida, Laxmi; Carrieri, Anna Paola; Beck, Kristen L.; Das, Promi; Gonzalez, Antonio; McDonald, Daniel; Ladau, Joshua; Karst, Soren M.; Albertsen, Mads; Ackermann, Gail; DeReus, Jeff; Thomas, Torsten; Petras, Daniel; Shade, Ashley; Stegen, James; Song, Se Jin; Metz, Thomas O.; Swafford, Austin D.; Dorrestein, Pieter C.; Jansson, Janet K.; Gilbert, Jack A.; Knight, Rob (2022)
  • Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
    Shah, Abzer K. Pakkir; Walter, Axel; Ottosson, Filip; Russo, Francesco; Navarro-Diaz, Marcelo; Boldt, Judith; Kalinski, Jarmo-Charles J.; Kontou, Eftychia Eva; Elofson, James; Polyzois, Alexandros; Gonzalez-Marin, Carolina; Farrell, Shane; Aggerbeck, Marie R.; Pruksatrakul, Thapanee; Chan, Nathan; Wang, Yunshu; Poechhacker, Magdalena; Brungs, Corinna; Camara, Beatriz; Caraballo-Rodriguez, Andres Mauricio; Cumsille, Andres; de Oliveira, Fernanda; Duehrkop, Kai; El Abiead, Yasin; Geibel, Christian; Graves, Lana G.; Hansen, Martin; Heuckeroth, Steffen; Knoblauch, Simon; Kostenko, Anastasiia; Kuijpers, Mirte C. M.; Mildau, Kevin; Papadopoulos Lambidis, Stilianos; Gomes, Paulo Wender Portal; Schramm, Tilman; Steuer-Lodd, Karoline; Stincone, Paolo; Tayyab, Sibgha; Vitale, Giovanni Andrea; Wagner, Berenike C.; Xing, Shipei; Yazzie, Marquis T.; Zuffa, Simone; de Kruijff, Martinus; Beemelmanns, Christine; Link, Hannes; Mayer, Christoph; van der Hooft, Justin J. J.; Damiani, Tito; Pluskal, Tomas; Dorrestein, Pieter; Stanstrup, Jan; Schmid, Robin; Wang, Mingxun; Aron, Allegra; Ernst, Madeleine; Petras, Daniel (2025)
  • The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal)
    Pinto-Almeida, Antonio; Bauermeister, Anelize; Luppino, Luca; Grilo, Ines R.; Oliveira, Juliana; Sousa, Joana R.; Petras, Daniel; Rodrigues, Clara F.; Prieto-Davo, Alejandra; Tasdemir, Deniz; Sobral, Rita G.; Gaudencio, Susana P. (2022)
  • The gene regulatory mechanisms shaping the heterogeneity of venom production in the Cape coral snake
    Nachtigall, Pedro G.; Hamilton, Brett R.; Kazandjian, Taline D.; Stincone, Paolo; Petras, Daniel; Casewell, Nicholas R.; Undheim, Eivind A. B. (2025)
  • The redox-sensitive R-loop of the carbon control protein SbtB contributes to the regulation of the cyanobacterial CCM
    Mantovani, Oliver; Haffner, Michael; Walke, Peter; Elshereef, Abdalla A.; Wagner, Berenike; Petras, Daniel; Forchhammer, Karl; Selim, Khaled A.; Hagemann, Martin (2024)